PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011094722.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NF-YB
Protein Properties Length: 185aa    MW: 20045.4 Da    PI: 6.5174
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011094722.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB187.97.2e-5931128198
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plkvyl++yre+eg
  XP_011094722.1  31 VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLTRYREMEG 125
                     69********************************************************************************************* PP

           NF-YB  96 ekk 98 
                     ++k
  XP_011094722.1 126 DTK 128
                     975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.2E-5526141IPR009072Histone-fold
SuperFamilySSF471133.26E-4134141IPR009072Histone-fold
PfamPF008082.3E-2837101IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.3E-206583No hitNo description
PROSITE patternPS0068506884IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.3E-2084102No hitNo description
PRINTSPR006151.3E-20103121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MADGQSSQGA PGSPAGGSHE SGGDQSPRSG VREQDRFLPI ANISRIMKKA LPANGKIAKD  60
AKETVQECVS EFISFITSEA SDKCQREKRK TINGDDLLWA MATLGFEDYI DPLKVYLTRY  120
REMEGDTKGS AKGADGSGRK DGLQQPIPNS QHPQLVHQGS FSQGMNYGNA QQQAQHMMVP  180
MPGMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B6e-4831122192Transcription factor HapC (Eurofung)
4g92_B6e-4831122192Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094723.11e-137PREDICTED: nuclear transcription factor Y subunit B-8-like
RefseqXP_011094722.11e-137PREDICTED: nuclear transcription factor Y subunit B-8-like
SwissprotQ8VYK42e-92NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0V0HS791e-106A0A0V0HS79_SOLCH; Putative nuclear transcription factor Y subunit B-10-like
STRINGGLYMA03G33490.14e-97(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.32e-87nuclear factor Y, subunit B8